I need to make an alignment based of codons, for determining dN/dS ratio in PAML.
What is a good and reliable way of making it, by using both nucleotide and aa sequences for the alignment?
For example: Making a protein alignment and determining corresponding codon positions from the nucleotide data.
Thank you
What is a good and reliable way of making it, by using both nucleotide and aa sequences for the alignment?
For example: Making a protein alignment and determining corresponding codon positions from the nucleotide data.
Thank you

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