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  • tushardave
    Junior Member
    • May 2014
    • 5
    #1

    dbSNP XML file to CSV conversion

    Hello Folks,

    I would like to get inputs from you guys regarding dbSNP XML file conversion. I would like to convert the XML file to CSV file. I have tried several online XML to CSV conversion tool but did not get success. Please provide your thoughts on the same. Is there any way that I can find dbSNP data in CSV/TXT format?

    Thanks.
    Tags: None
  • larsgt
    Junior Member
    • Jun 2012
    • 6
    #2
    Use annovar

    Originally posted by tushardave View Post
    Hello Folks,

    I would like to get inputs from you guys regarding dbSNP XML file conversion. I would like to convert the XML file to CSV file. I have tried several online XML to CSV conversion tool but did not get success. Please provide your thoughts on the same. Is there any way that I can find dbSNP data in CSV/TXT format?

    Thanks.
    I don't know if it's what you need. But one option is just to use the converted files you can get with Annovar.

    Comment

    • lindenb
      Senior Member
      • Apr 2010
      • 143
      #3
      You could use the following example I posted biostars: " How To Get A Dbsnp Data From Java?" https://www.biostars.org/p/95284/

      Comment

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