[sagarutturkar]

Genemark

Hi,

I was not able to resolve some later errors with GlimmerHMM. I ran my genome with GeneMark-ES which was simpler option. http://exon.gatech.edu/GeneMark/

Thanks
Sagar

[r_sitaram]

Hello ersgupta, we were finally able to solve it by trying to edit the code and modifying the array size to accommodate the large genome size that we were dealing with. If I remember correctly, our error was coming in the score.c and score2.c files. Hope this helps.

[ersgupta]

@sagarutturkar.. I will try that out. Thanks.

@r_sitaram... Thanks for the reply, I also found the same issue, had changed the array size in score.c, then it gave error in another file, then another file. After changing 2-3 files I stopped, as I wasn't 100% sure, what algorithmic changes it might cause. I hope your predictions were not affected by all these changes.