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  • Fernas
    Member
    • Apr 2013
    • 74

    #1

    How to Convert SRA to WIG format?

    I have methylation files in SRA format and I want to convert them to WIG and/or to bed file formats? Is there tool(s) that can do that?
  • dpryan
    Devon Ryan
    • Jul 2011
    • 3478

    #2
    It's likely that the SRA file just contains unaligned reads, so you'll need to dump them to fastq (fastq-dump from the SRA toolkit), align those, and then make a WIG file of whatever you're interested in looking at.

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    • Fernas
      Member
      • Apr 2013
      • 74

      #3
      Thanks @dpryan.

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