Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • MG-RAST KEGG mapper?

    Hi folks,

    I'm using MG-RAST to analyze my 454 metagenomic data and have run into an irritating feature - wondering if anyone has a workaround! In the KEGG map view, honing in on Nitrogen Metabolism, I can see the reads (blue) and contigs (red) mapped to different EC numbers, and when I hover over it will tell me how many sequences are mapped. The issue I'm having is that I ahve no way of accessing WHICH reads these are to analyze them further. Anyone have ideas?? I can't seem to find this same feature browsing or blasting the data, so I don't understand where the kegg mapper is getting this info....


    Thanks!!
    Attached Files

  • #2
    Try the following:

    -Click the analysis button upper right
    -Click on hierarchical classification
    -select your metagenome and annotation source KO (KEGG orthology)
    -ask for a table
    -hit generate
    -use filters or search for the function
    -when you find the function or enzyme the abundance number in blue is a link that opens a new tab with the reads corresponding to that function

    Comment

    Latest Articles

    Collapse

    • seqadmin
      The Impact of AI in Genomic Medicine
      by seqadmin



      Article Coming Soon......
      Today, 02:07 PM
    • seqadmin
      Multiomics Techniques Advancing Disease Research
      by seqadmin


      New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

      A major leap in the field has
      ...
      02-08-2024, 06:33 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 02-23-2024, 04:11 PM
    0 responses
    31 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 02-21-2024, 08:52 AM
    0 responses
    46 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 02-20-2024, 08:57 AM
    0 responses
    36 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 02-14-2024, 09:19 AM
    0 responses
    63 views
    0 likes
    Last Post seqadmin  
    Working...
    X