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Hello all,
I have alignments in Eland format, how can I use samtools for SNPs calling?
Thanks
I have alignments in Eland format, how can I use samtools for SNPs calling?
Thanks
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There is no single "Eland" format. The Eland aligner outputs in a number of different (albeit very similar) formats. The most commonly used is an export file. If you have a file in the export format then you can simply convert it using the export2sam.pl script which is included in the samtools package. -
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