Hello,
I have been trying to make a vcf file for mm10 dbsnp to use for GATK base quality recalibration and have been unsuccessful. Does anybody know where to download this file or what is the easiest way to make it?
I've tried downloading snp137.txt from ucsc and converting to vcf with GATK VariantsToVCF but that didn't work, it ran and produced an empty file.
Has anybody done this successfully?
Thanks in advance!
I have been trying to make a vcf file for mm10 dbsnp to use for GATK base quality recalibration and have been unsuccessful. Does anybody know where to download this file or what is the easiest way to make it?
I've tried downloading snp137.txt from ucsc and converting to vcf with GATK VariantsToVCF but that didn't work, it ran and produced an empty file.
Has anybody done this successfully?
Thanks in advance!
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