Hello !
Is there a tool available to randomly select let's say 1,000 snps in a vcf file ?
Thank you !
Muriel
Is there a tool available to randomly select let's say 1,000 snps in a vcf file ?
Thank you !
Muriel
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Hey,
This might be helpful: https://www.biostars.org/p/16038/
If each line of your vcf is a different SNP you can do:
shuf -n 1000 X.vcf
Otherwise you could parse out only variant positions into a new file first.
Gavin -
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Hi all !
Thanks a lot for your answers.
Lindenb, I would like to use your tool but don't manage to install it...
I tried to follow the installation but it doesn't work.
I did :
But then I am supposed to move into a directory (cd htsjdk) but it doesn't exist...Code:git clone "https://github.com/lindenb/jvarkit.git" cd jvarkit git submodule init git submodule update git submodule foreach git pull origin master
Can you help ? This tools looks awesome !!
Thank you !
MurielComment
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