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  • papori
    Senior Member
    • Dec 2010
    • 181

    #1

    TCGA files name

    Hi all,
    What is the difference between files that has:
    _1
    _2
    _3
    _4
    to regular files (.bam) in the TCGA data?

    for example:
    TCGA-A2-A04T-01A-21D-A128-09_IlluminaGA-DNASeq_whole.bam
    TCGA-A7-A0CE-01A-11D-A12L-09_IlluminaGA-DNASeq_whole_1.bam
    TCGA-A2-A0D3-01A-11D-A10Y-09_IlluminaGA-DNASeq_exome_2.bam
    TCGA-A2-A04N-01A-11D-A10Y-09_IlluminaGA-DNASeq_exome_4.bam

    At the begining i thoght that it is single end, but what is _4??
    Thanks,
    Pap

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