I am getting this error in the summary file while running validateSam tool on 1 of my wgs bams:
## HISTOGRAM java.lang.String
Error Type Count
ERROR:INVALID_VERSION_NUMBER 1
Any idea what this might mean ?
The log file indicates it ran thru the reads ...
tail validatesam_2.log
...snipped...
INFO 2014-06-07 20:10:48 SamFileValidator Validated Read 1,940,000,000 records. Elapsed time: 05:26:06s. Time for last 10,000,000: 101s. Last read position: hs37d5:30,692,109
[Sat Jun 07 20:48:30 EDT 2014] picard.sam.ValidateSamFile done. Elapsed time: 363.81 minutes.
Runtime.totalMemory()=3613786112
To get help, see http://picard.sourceforge.net/index.shtml#GettingHelp
## HISTOGRAM java.lang.String
Error Type Count
ERROR:INVALID_VERSION_NUMBER 1
Any idea what this might mean ?
The log file indicates it ran thru the reads ...
tail validatesam_2.log
...snipped...
INFO 2014-06-07 20:10:48 SamFileValidator Validated Read 1,940,000,000 records. Elapsed time: 05:26:06s. Time for last 10,000,000: 101s. Last read position: hs37d5:30,692,109
[Sat Jun 07 20:48:30 EDT 2014] picard.sam.ValidateSamFile done. Elapsed time: 363.81 minutes.
Runtime.totalMemory()=3613786112
To get help, see http://picard.sourceforge.net/index.shtml#GettingHelp