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  • bapun
    Junior Member
    • Mar 2013
    • 1
    #1

    ValidateSam Error

    I am getting this error in the summary file while running validateSam tool on 1 of my wgs bams:

    ## HISTOGRAM java.lang.String
    Error Type Count
    ERROR:INVALID_VERSION_NUMBER 1

    Any idea what this might mean ?

    The log file indicates it ran thru the reads ...

    tail validatesam_2.log
    ...snipped...
    INFO 2014-06-07 20:10:48 SamFileValidator Validated Read 1,940,000,000 records. Elapsed time: 05:26:06s. Time for last 10,000,000: 101s. Last read position: hs37d5:30,692,109
    [Sat Jun 07 20:48:30 EDT 2014] picard.sam.ValidateSamFile done. Elapsed time: 363.81 minutes.
    Runtime.totalMemory()=3613786112
    To get help, see http://picard.sourceforge.net/index.shtml#GettingHelp
    Tags: bam, validatesam
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