I am planning to analyze some C elegans sequencing data. I have been been trying to find a resource for known SNPs for base recalibration and variant annotation. It seems that this info is not as easy to find as it is for other organisms that I am more familiar with.
Looks like SNP information is available in WormBase, since there is a "polymorphisms" track in GBrowse. However, I cannot find the raw data anywhere on the FTP site.
There is also a Wash U SNPs database (http://genome.wustl.edu/services/c-elegans-snpdata/), but that has not been updated since 2001.
I am ideally looking for a VCF file for build WS220 (UCSC ce10), but any info would be much appreciated.
Looks like SNP information is available in WormBase, since there is a "polymorphisms" track in GBrowse. However, I cannot find the raw data anywhere on the FTP site.
There is also a Wash U SNPs database (http://genome.wustl.edu/services/c-elegans-snpdata/), but that has not been updated since 2001.
I am ideally looking for a VCF file for build WS220 (UCSC ce10), but any info would be much appreciated.
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