hi all- how could I produce a tree with bootstrap values after carrying out progressive mauve alignment and getting guide tree?
-
-
The guide_tree file is a newick tree format, every program could read this format.
I have used R:
Code:library(ape) t <- read.tree("mauve.out.guide_tree") plot(t) -
Thank you I opened the guide tree file with figtree but the tree does not show bootstrap values??- any suggestions pleaseOriginally posted by TiborNagy View PostComment
-
Thank you I opened the guide tree file with figtree but the tree does not show bootstrap values??- any suggestions pleaseComment
-
would figtree show bootstrap values on the guide tree produced by progressive mauve?Comment
-
NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
Comment