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  • cmccabe
    Senior Member
    • Jul 2012
    • 355

    bedtools installation on ubuntu

    I can not seem to install bedtools on ubuntu.

    Here are the steps I am doing.

    Code:
     sudo apt-get install zlib
    Code:
     sudo apt-get install zlib-devel
    Code:
     sudo apt-get install bedtools
    Thanks.
  • Bukowski
    Senior Member
    • Jan 2010
    • 388

    #2
    And what are the errors you are encountering?

    Comment

    • cmccabe
      Senior Member
      • Jul 2012
      • 355

      #3
      someone log into ubuntu as a guest, so sudo apt-get didn't have rights. I log in as admin and everything is fine on the install.

      I am running bedtools 2.17.0 and using the mergeBed command I get an error that says comand not found

      Code:
       mergeBed -i hgTables.bed > merged.bed
      Thanks.

      Comment

      • cmccabe
        Senior Member
        • Jul 2012
        • 355

        #4
        I will re-post this. Thank you.

        Comment

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