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prm36

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Join Date: Mar 2010

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MAQ paired ends

04-15-2010, 07:29 AM

Hi all, I'm running maq.pl easyrun to assemble bacterial sequences. However I am not getting the unmapped reads dumped to a file as I do when assembling single end reads.

Is it possible to dump the unmapped reads or does anyone know of a workaround?

Cheers

Paul
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