I have 45 samples which may or may not cluster according to genotype (three de novos assembled using Trinity), time and/or treatment (T0 control only, T1, control and treatment, T2 control and treatment)
With so many aspects to consider, can anyone advise how best to analyse and visualize the DGE data I have (processed through EdgeR), and with what software? I had been looking at PCA clustering and Multi-dimensional scaling with web based applications, including VENNT, EXPANDER AND J-Express, but am new to all this and thought it wise to consult first
With so many aspects to consider, can anyone advise how best to analyse and visualize the DGE data I have (processed through EdgeR), and with what software? I had been looking at PCA clustering and Multi-dimensional scaling with web based applications, including VENNT, EXPANDER AND J-Express, but am new to all this and thought it wise to consult first
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