bwasw: get SAM output containing all hits per query?

[bbimber]

when running bwasw (not bwa aln) is it possible to produce a SAM output containing all matches per read, not just one hit? i've seen a number of posts asking this question about bwa aln, but have not seen it about bwasw. these two seem to produce distinct outputs, with bwasw producing a SAM file directly.

thanks for any help.

[lh3]

Sorry, this is not possible by design.