extract miRNA-loop from miRBase

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Palgrave

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Join Date: Aug 2011

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#1

extract miRNA-loop from miRBase

07-24-2014, 10:06 PM

Does anyone have a good way to extract miRNA-loop sequences from the miRBase database?
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TiborNagy

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Join Date: Mar 2010

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#2

07-25-2014, 05:07 AM

No. I have checked the FTP sites and the SQL tables. There is no loop sequence in miRBase. You can download hairpin sequences and use RNAfold on it.
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