Hi,
Could I please be adviced on the following problem. I have sam files generated from bismark. I converted it to bam file using samtools view and sorted it by coordinates using samtools sort. When I checked the header of both the sorted and unsorted bam files, they both stated the files are unsorted.
I am unsure why this would be the case.
Would anyone be able to shed light on this issue?
Thanks
Could I please be adviced on the following problem. I have sam files generated from bismark. I converted it to bam file using samtools view and sorted it by coordinates using samtools sort. When I checked the header of both the sorted and unsorted bam files, they both stated the files are unsorted.
I am unsure why this would be the case.
Would anyone be able to shed light on this issue?
Thanks
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