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  • error of Global symbol "%Config" in transcriptome analysis

    Hi everybody,

    I am doing transcriptome data analysis. I am try to install TGICL, I export a path use the code:

    export PERL5LIB=/home/cishu/Download/TGICL-2.1/lib:$PERL5LIB

    After that, I met the same error whatever I run tgicl or RSEM, the error is list below:

    For RSEM:

    Global symbol "%Config" requires explicit package name at /usr/share/perl/5.10/Pod/Usage.pm line 567.
    Global symbol "%Config" requires explicit package name at /usr/share/perl/5.10/Pod/Usage.pm line 575.
    Compilation failed in require at /home/cishu/Download/rsem-1.2.12/rsem-prepare-reference line 4.
    BEGIN failed--compilation aborted at /home/cishu/Download/rsem-1.2.12/rsem-prepare-reference line 4.
    Error, cmd: rsem-prepare-reference --transcript-to-gene-map Transcriptref.fa.component_to_trans_map Transcriptref.fa Transcriptref.fa.TRANS died with ret: 65280 at /home/cishu/Download/trinityrnaseq_r20131110/util/RSEM_util/run_RSEM_align_n_estimate.pl line 273.

    For TGICL:

    Global symbol "%Config" requires explicit package name at /usr/lib/perl/5.10/lib.pm line 10.
    Global symbol "%Config" requires explicit package name at /usr/lib/perl/5.10/lib.pm line 11.
    Global symbol "%Config" requires explicit package name at /usr/lib/perl/5.10/lib.pm line 12.
    Compilation failed in require at /home/cishu/Download/TGICL-2.1/bin/tgicl line 8.
    BEGIN failed--compilation aborted at /home/cishu/Download/TGICL-2.1/bin/tgicl line 8.

    Could anybody show me what's wrong? Thanks!!!

  • #2
    I think the dependencies are outdated. (lib.pm and Usage.pm)

    Comment


    • #3
      Originally posted by TiborNagy View Post
      I think the dependencies are outdated. (lib.pm and Usage.pm)
      Thank you!

      And what should I do to fix it?

      Comment

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