Hi, can anyone help me find a tool which can convert xml blast output format to tabular. It's better to support blast+.
Thank you.
Ben
Thank you.
Ben
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C:\Python27\python blastxml_to_tabular.py -o nitrogen.txt nitrogen.xml
python blastxml_to_tabular.py -o nitrogen.txt nitrogen.xml
python blastxml_to_tabular.py nitrogen.xml -o nitrogen.txt
<?xml version="1.0"?> <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastp</BlastOutput_program> <BlastOutput_version>BLASTP 2.2.24+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db>nr</BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> <BlastOutput_query-def>Sample</BlastOutput_query-def> <BlastOutput_query-len>516</BlastOutput_query-len> ...
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