Dear All,
I am using bowtie version 2.2.2 and I would like to set an option that is still in use in bowtie.
I tried to run bowtie2 with -M option and this warning appears:
From bowtie2 manual -D and -R are not similar to -M option.
How can I report n random hits in bowtie2?
Any suggestion
Thanks,
Paolo
I am using bowtie version 2.2.2 and I would like to set an option that is still in use in bowtie.
-M <int> like -m, but reports 1 random hit (MAPQ=0); requires --best
Warning: -M is deprecated. Use -D and -R to adjust effort instead.
How can I report n random hits in bowtie2?
Any suggestion
Thanks,
Paolo