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  • EdgeR warning

    Hello!

    I am analyzing differential expression of may samples and when I execute the command bellow, a warning message is generated

    d = exactTest(d, pair = c("DFOS","CTOS"))
    Warning message:
    In mglmOneGroup(y, dispersion = dispersion, offset = offset) :
    max iteractions exceeded for 1 tags

    Does anybody knows how to solve this warning?

    Thanks

  • #2
    You'd need to edit the function to allow more iterations. I wouldn't bother, though, for just one gene.

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