EdgeR warning

rakscalloni

Member

Join Date: Apr 2014

Posts: 16
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#1

EdgeR warning

07-31-2014, 10:59 AM

Hello!

I am analyzing differential expression of may samples and when I execute the command bellow, a warning message is generated

d = exactTest(d, pair = c("DFOS","CTOS"))
Warning message:
In mglmOneGroup(y, dispersion = dispersion, offset = offset) :
max iteractions exceeded for 1 tags

Does anybody knows how to solve this warning?

Thanks
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dpryan

Devon Ryan

Join Date: Jul 2011

Posts: 3478
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#2

07-31-2014, 12:50 PM

You'd need to edit the function to allow more iterations. I wouldn't bother, though, for just one gene.
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