Getting gene coordinate not exons

[adrian]

Hi:
Is there a way to get gene coordinates rather exon coordinates for Hg19 as a bed file.

I do not want exon coordinates since it is repeating my values from a different file.

I want to have:

Chr1 x y Gene1
Chr1 x1 y1 Gene2
chr1 x1 y3 Gene3

Thanks
Adrian

[a.kmg]

You can use the Biomart of Ensembl to recover this file.

http://www.ensembl.org/biomart/

Choose your dataset (human, mouse, ...)

Select the attributes you want. Here:

Features => GENE :

Ensembl Gene ID
Gene Start (bp)
Gene End (bp)
Chromosome Name

(clear "Ensembl Transcript ID", which is checked by default)

Click on "Results" and export the data.

[adrian]

thank you. it was helpful

[a.kmg]

You're welcome