I am working with a few genes which I know have undergone a variable amount of gene duplication events within and between species.
The trouble I have been having though it determining the best way to figure out how many duplicates are being expressed in my RNA seq runs. When I do a denovo assembly, I can obviously see multiples, but determining the exact amount is something I can not figure out.
Any suggestions on who to deal with this? Our lab has access to geneious and clc genomics workbench if there programs are of any help.
Thanks,
Mike
The trouble I have been having though it determining the best way to figure out how many duplicates are being expressed in my RNA seq runs. When I do a denovo assembly, I can obviously see multiples, but determining the exact amount is something I can not figure out.
Any suggestions on who to deal with this? Our lab has access to geneious and clc genomics workbench if there programs are of any help.
Thanks,
Mike
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