Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Time
  • Show
Clear All
new posts
Previous template Next
  • amaurizio
    Junior Member
    • Sep 2012
    • 4
    #1

    BWA_MEM on PacBio Reads

    Hello, can anybody explain me please how does the BWA-mem -x pacbio (Release 0.7.10, default settings ) algorithm work?

    I found this interesting blog http://www.homolog.us/blogs/blog/201...-benchmarking/ but it is still not clear to me.

    Can you also suggest me how to unambiguously distinguish mapped/unmapped and multimapping reads?

    Thank you very much!!

    Aurora
    Tags: bwa_mem
    • dpryan
      Devon Ryan
      • Jul 2011
      • 3478
      #2
      Please don't crosspost on here and biostars.

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • kinpict.com
          Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
          by kinpict.com
          The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
          Today, 06:37 PM
        • SEQadmin2
          16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
          by SEQadmin2





          NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
          10-30-2026, 06:46 AM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        Gene Copies Once Dismissed as Junk DNA Shape Animal Adaptation and Human Disease by SEQadmin2
        Started by SEQadmin2, 11-12-2026, 07:59 AM
        0 responses
        27 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        11-12-2026, 07:59 AM  
        WashU Medicine Study Verifies Methods for Tracking Genetic Mosaicism by SEQadmin2
        Started by SEQadmin2, 11-05-2026, 09:25 AM
        0 responses
        35 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        11-05-2026, 09:25 AM  
        HuBMAP Portal Offers Free Access to Single-Cell Data from Healthy Human Tissues by SEQadmin2
        Started by SEQadmin2, 11-03-2026, 11:54 AM
        2 responses
        56 views
        0 reactions
        		 Last Post kinpict.com
        by kinpict.com
        Today, 06:49 PM  
        Genome Sequencing Reveals Large, Repeat-Rich DNA in Trapdoor Spider Named for Stephen Colbert by SEQadmin2
        Started by SEQadmin2, 10-28-2026, 09:57 AM
        0 responses
        175 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        10-28-2026, 09:57 AM  
        View All
        Working...