I'm trying to run differential expression using EdgeR and/or DEseq2 on the Ratsch Lab galaxy server but I keep getting this error:
[bam_parse_region] fail to determine the sequence name
I mapped the groomed and filtered FastQ files with Tophat2 using the mm10 reference and did DE expression with the Tophat2 bam files and the UCSC genes.gtf files.
Anyone know what could be the problem?
[bam_parse_region] fail to determine the sequence name
I mapped the groomed and filtered FastQ files with Tophat2 using the mm10 reference and did DE expression with the Tophat2 bam files and the UCSC genes.gtf files.
Anyone know what could be the problem?
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