What does this mean:
zheng@zheng-XPS-8500:~/Desktop/bbmap/20140916ngs$ kmercountexact.sh in=Nfkb-05RNS160m_S5_L001_R1_001.fastq outk=Nfkb-05RNS160m_S5_L001_R1_001_counts16.txt mincount=3 k=16
java -ea -Xmx11527m -cp /home/zheng/Desktop/bbmap/current/ jgi.CountKmersExact in=Nfkb-05RNS160m_S5_L001_R1_001.fastq outk=Nfkb-05RNS160m_S5_L001_R1_001_counts16.txt mincount=3 k=16
Executing jgi.CountKmersExact [in=Nfkb-05RNS160m_S5_L001_R1_001.fastq, outk=Nfkb-05RNS160m_S5_L001_R1_001_counts16.txt, mincount=3, k=16]
ways=37
Initial:
Memory: free=187m, used=64m
Final:
Memory: free=473m, used=216m
Input: 780893 reads 21865004 bases.
Result: 0 reads (0.00%) 0 bases (0.00%)
Unique Kmers: 8523380
Exception in thread "main" java.lang.AssertionError: TGTGTATAAGAGACCA 3
at kmer.KmerNode.dumpKmersAsText(KmerNode.java:155)
at kmer.HashForest.dumpKmersAsText(HashForest.java:211)
at kmer.HashArray.dumpKmersAsText(HashArray.java:249)
at jgi.CountKmersExact.dumpKmersAsText(CountKmersExact.java:749)
at jgi.CountKmersExact.process(CountKmersExact.java:383)
at jgi.CountKmersExact.main(CountKmersExact.java:58)
zheng@zheng-XPS-8500:~/Desktop/bbmap/20140916ngs$ kmercountexact.sh in=Nfkb-05RNS160m_S5_L001_R1_001.fastq outk=Nfkb-05RNS160m_S5_L001_R1_001_counts16.txt mincount=3 k=16
java -ea -Xmx11527m -cp /home/zheng/Desktop/bbmap/current/ jgi.CountKmersExact in=Nfkb-05RNS160m_S5_L001_R1_001.fastq outk=Nfkb-05RNS160m_S5_L001_R1_001_counts16.txt mincount=3 k=16
Executing jgi.CountKmersExact [in=Nfkb-05RNS160m_S5_L001_R1_001.fastq, outk=Nfkb-05RNS160m_S5_L001_R1_001_counts16.txt, mincount=3, k=16]
ways=37
Initial:
Memory: free=187m, used=64m
Final:
Memory: free=473m, used=216m
Input: 780893 reads 21865004 bases.
Result: 0 reads (0.00%) 0 bases (0.00%)
Unique Kmers: 8523380
Exception in thread "main" java.lang.AssertionError: TGTGTATAAGAGACCA 3
at kmer.KmerNode.dumpKmersAsText(KmerNode.java:155)
at kmer.HashForest.dumpKmersAsText(HashForest.java:211)
at kmer.HashArray.dumpKmersAsText(HashArray.java:249)
at jgi.CountKmersExact.dumpKmersAsText(CountKmersExact.java:749)
at jgi.CountKmersExact.process(CountKmersExact.java:383)
at jgi.CountKmersExact.main(CountKmersExact.java:58)
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