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  • camilla_87
    Junior Member
    • Sep 2014
    • 2
    #1

    Error creating my database in snpEff

    Hi everyone,
    I m using SnpEff and I have a problem when I create my database.
    This is a command line to do database: java -jar snpEff.jar build -gff3 -v SL2.4
    When I run It, snpEff seems to work...
    but appears the error shown in the pdf file.
    It means that java does not find the file, but thre is genes.gff3 file.
    How can I solve ?

    thank you very much everyone
    Attached Files
    Last edited by camilla_87; 09-17-2014, 03:13 AM.
    Tags: None
    • darked89
      Member
      • Jun 2009
      • 38
      #2
      From the error it seems that it looks for "genes.gff" and not "genes.gff3". Just link it and see if it works,

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