Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • camilla_87
    Junior Member
    • Sep 2014
    • 2

    #1

    Error creating my database in snpEff

    Hi everyone,
    I m using SnpEff and I have a problem when I create my database.
    This is a command line to do database: java -jar snpEff.jar build -gff3 -v SL2.4
    When I run It, snpEff seems to work...
    but appears the error shown in the pdf file.
    It means that java does not find the file, but thre is genes.gff3 file.
    How can I solve ?

    thank you very much everyone
    Attached Files
    Last edited by camilla_87; 09-17-2014, 03:13 AM.
  • darked89
    Member
    • Jun 2009
    • 38

    #2
    From the error it seems that it looks for "genes.gff" and not "genes.gff3". Just link it and see if it works,

    Comment

    Latest Articles

    Collapse

    • kinpict.com
      Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by kinpict.com
      The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
      Today, 06:37 PM
    • SEQadmin2
      16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by SEQadmin2





      NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
      10-30-2026, 06:46 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 11-12-2026, 07:59 AM
    0 responses
    27 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 11-05-2026, 09:25 AM
    0 responses
    35 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 11-03-2026, 11:54 AM
    2 responses
    56 views
    0 reactions
    Last Post kinpict.com  
    Started by SEQadmin2, 10-28-2026, 09:57 AM
    0 responses
    175 views
    0 reactions
    Last Post SEQadmin2  
    Working...