HELP: Loading of ChIP-Seq data (from Illumina GA) to CisGenome

[Space]

Dear all,

I am a beginner for ChIP-Seq. After obtaining sequencing raw data from Illumina GA, I am trying to load my raw data (text files) to CisGenome. I already have loaded genome database (hg19) to CisGenome after installation. According to the tutorial of CisGenome, maybe, I can load my ChIP-Seq data by the manu "Sequencing -> Alignment -> BAR". However, I cannot load now. Could you please teach me how can I do for that? Actually, I don't know well which text file (s_#_sorted.txt, s_#_eland_extended, or s_#_sequence???) is suitable for CisGenome. And also, the format conversion from ELAND to ALN is not working in my case. I will appreciate you if you help me. Thank you.

Space

[Bioinfo]

Hi
First you should convert ELAND ( s_#_eland_extended) to ALN. Then you can go for Sequencing -> Alignment (file you created using ELAND to ALN)-> BAR.
Plz make sure that CisGenome project folder and files are not in the path containing any white space(my documents(should be mydocuments)).
Good Luck