I have VCF file version:, ##fileformat=VCFv4.1 from isaac variant caller.
Header of the output:
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HCC2218C
If I read that, it means the depth coverage for this particular variant call is 2644.
Please correct, if I am wrong.
So, if the depth of coverage is high during variant calling, this particular SNP/variant is one of the higher disturbance causing? Is that correct? The higher DP, the high chances of a variation being causal.
Header of the output:
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HCC2218C
chrM 12941 . G A 3070.00 PASS SNVSB=-34268.1;SNVHPOL=4 GT:GQ:GQX: DP: DPF:AD 1/1:3070:3070:31471:2644:22,31437
Please correct, if I am wrong.
So, if the depth of coverage is high during variant calling, this particular SNP/variant is one of the higher disturbance causing? Is that correct? The higher DP, the high chances of a variation being causal.
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