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  • bioman1
    Member
    • May 2012
    • 80

    #1

    Script to extract contigs based on sequence size

    Do you anyone have script or you know any script available already to read the nucleotide fasta file and extract the contigs based on sequence size (eg.300 bp, 500 bp, 1 Kbp etc).
  • Brian Bushnell
    Super Moderator
    • Jan 2014
    • 2709

    #2
    Reformat will do that.

    reformat.sh in=x.fasta out=y.fasta minlen=300 maxlen=500

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