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    Junior Member
    • Sep 2014
    • 1

    #1

    Question about Qiime assign taxonomy result

    Hi all

    I try to analyze 16s amplicon data by qiime in this day, and the assign_taxonomy.py result show empty rank in many different OTU

    5989 k__Bacteria;p__GN04;c__;o__;f__;g__;s__
    5988 k__Archaea;p__[Parvarchaeota];c__[Parvarchaea];o__YLA114;f__;g__;s__

    I try assign taxonomy in different method(rdp,uclust...) but output same result.

    Is this normal? And what reason cause that?

    Thanks a lot!!

    WT

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