Use of IMAGE for gap filling using SOLiD runs.

kasutubh

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Join Date: Mar 2010

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Use of IMAGE for gap filling using SOLiD runs.

05-06-2010, 03:02 AM

Hello everyone,

We are trying to close gaps between our contigs generated by different sequencing technologies (sanger and 454). In parallel, we also have the SOLiD data for the same and now are planning to use it for gap filling. We recently came across IMAGE (http://genomebiology.com/2010/11/4/R41), however it has been written to integrated the Illumina chemistry (and subsequent file formats). Does anyone have an idea how it can be used to run SOLiD files (.bam format)? and if yes how?

Regards,

Kaustubh Gokhale.
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KevinLam

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Join Date: Nov 2009

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05-07-2010, 12:43 AM

have you considered consed ?

http://kevin-gattaca.blogspot.com/
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Use of IMAGE for gap filling using SOLiD runs.

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