Hi Guys!
I have a problem concerning ChIPseq peaks data that I have to analyze, looking at the overlap with another file in bed format.
I downloaded ChIP data from this link , but the peaks are reported as WIG format ( I downloaded the WIG file at the bottom of the linked page in GEO).
Do you know if I have to use a particular function to process the wig file and extract final peaks coordinates in BED format or I can just try to convert the WIG in a .bed file ?
I didn't understand in page on GEO if this WIG already contains information about final peaks or not. Thanks a lot in adavance since I'm not very expert with ChIP-seq data analysis and this issue seems to be not trivial for me.
I have a problem concerning ChIPseq peaks data that I have to analyze, looking at the overlap with another file in bed format.
I downloaded ChIP data from this link , but the peaks are reported as WIG format ( I downloaded the WIG file at the bottom of the linked page in GEO).
Do you know if I have to use a particular function to process the wig file and extract final peaks coordinates in BED format or I can just try to convert the WIG in a .bed file ?
I didn't understand in page on GEO if this WIG already contains information about final peaks or not. Thanks a lot in adavance since I'm not very expert with ChIP-seq data analysis and this issue seems to be not trivial for me.