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  • RoshMan
    Special Member
    • Jul 2014
    • 7

    #1

    Reading Mutations

    Hello,

    I apologize if this is in the wrong area of the forum.

    I am working with a lot of mutation data and was confused on how to read the specific mutation. I have put in 9 mutations that I have. Could someone explain how to read this information (Like was do the ">" and "/" actually mean)? Also how do i determine the length of the mutation?

    Some data:
    A>A/AAAAG
    A>A/AAAC
    A>A/AAG
    A>A/C
    T>T/G
    T>C/C
    AAAAG>A/A
    AAAT>AAAT/A
    AACACACAC>AACACACAC/A


    Sincere Thanks in Advance
    Last edited by RoshMan; 10-14-2014, 07:42 AM. Reason: Additional Question
  • Brian Bushnell
    Super Moderator
    • Jan 2014
    • 2709

    #2
    I assume it is of the form:
    "reference" > "allele 1"/"allele 2"

    The length of the mutation (which is somewhat subjective) is thus maximum of the length of the reference or one of the alleles.

    Comment

    • RoshMan
      Special Member
      • Jul 2014
      • 7

      #3
      What do ">" and "/" mean?

      Comment

      • Brian Bushnell
        Super Moderator
        • Jan 2014
        • 2709

        #4
        Nothing, they are separators. But ">" implies that an arrow (the thing on the left changed to the thing on the right) and "/" is used to separate alternate alleles.

        Comment

        • RoshMan
          Special Member
          • Jul 2014
          • 7

          #5
          Ok, I think I understand

          Thank You

          Comment

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