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  • transforu
    Junior Member
    • Sep 2014
    • 5
    #1

    about remove duplicate

    Hello!
    I am having trouble about removing duplicate reads,
    One experiment have many runs,
    Should I remove duplicate one by one runs?
    Or merge all runs then remove duplicate

    Thanks for your help!
    Tags: None
    • dpryan
      Devon Ryan
      • Jul 2011
      • 3478
      #2
      Were the runs from the same library? If so, then merge and remove duplicates. If not, then remove duplicates and then merge. Duplicates need to be removed per library.

        Comment

        • transforu
          Junior Member
          • Sep 2014
          • 5
          #3
          Very clear ! many thanks !!!

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