[homeuser1]

Hi, any update regarding the cummerbund error? Thanks

[lgoff]

Hi All,
Quick update. The patched version of cummeRbund (release 2.8.2) is now up at bioconductor and passes all builds and checks:

http://www.bioconductor.org/checkResults/3.0/bioc-LATEST/cummeRbund/

So you should be able to update to this version using the bioconductor installer:

source('http://www.bioconductor.org/biocLite.R')
biocLite('cummeRbund')

I have verified that most of the problems discussed in this thread have been handled, at least as far as I can test. There may be other functionality that has been broken that I have not come across yet. If you are still having problems, and you are certain that it pertains to the RSQLite compatibility, please let me know directly by email and I will try to work with you to get it resolved quickly.

Future development of cummeRbund will be done on Github:

http://github.com/gofflab/cummeRbund

So feel free to open an issue there or submit any pull requests you may have.

Thanks again for bearing with me, and apologies for not catching this change sooner!

Cheers,
Loyal

[qgong]

Thanks! I met the same problem and this solution works!

I think I may have solved problem. And you can try my steps。
First, upgrade biocLite:
>source("http://www.bioconductor.org/biocLite.R")
>biocLite("BiocUpgrade")

Then, install "cummeRbund"
>biocLite("cummeRbund")

Last, install or reinstall "RSQLite"
>biocLite("RSQLite")

I hope it works for you.