Zoom And SAM format

[seq777]

Hi All

Does anyone know of a tool to convert zoom! (zillions of oligos mapped) output to SAM format.

This page:

http://samtools.sourceforge.net/swlist.shtml

says there are third party converts. Does anyone know where they are? I can't seem to find any on the zoom website nor in the zoom directory. I also can't seem to locate it in samtools.

Many Thanks
Dave

[nilshomer]

Hi All

Does anyone know of a tool to convert zoom! (zillions of oligos mapped) output to SAM format.

This page:

http://samtools.sourceforge.net/swlist.shtml

says there are third party converts. Does anyone know where they are? I can't seem to find any on the zoom website nor in the zoom directory. I also can't seem to locate it in samtools.

Many Thanks
Dave

Check out the "misc" folder in the samtools distribution (or svn code).