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  • blimpsauce
    Junior Member
    • Oct 2014
    • 1

    #1

    Using tgicl with a database

    Edit: Nevermind. I just wasn't waiting long enough. :P

    Hi everyone,

    I've recently started using tgicl. I can get it to run just fine without using the database options, but I want to try it with a database so I can manage the results better, or at least get an html report.
    So far I've tried it with MySQL 5.5. I created a database for tgicl, called tgicldb, then I ran tgicl with this command:

    Code:
    tgicl -F whatever.fasta -c 8 -b root:password:mysql:localhost:tgicldb -R
    It runs as usual, but it doesn't do anything to the database. I looked at the tgicl.cfg file, and I noticed that some of its values changed based on the command line options I gave, but the database options not only didn't change, but remained commented-out.

    I tried the run again by making a copy of the .cfg file in my working directory, and changing all the values there instead of at the command line. This time, it just sits there. If I watch the tgicl log file, it just stays at:

    Code:
    Trying to load /home/blimps/whatever.fasta into the database.
    Has anyone here done this before and have any ideas on what I could be doing wrong?
    Last edited by blimpsauce; 10-28-2014, 12:10 PM.

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