I want to get all the coordinates (positions) of the GC in the entire genome hg19 as a bed file (or similar format). Is there a tool to do that? or I have to write a script to read the fasta file and identify GC positions and then write one line (bed file line) per GC?
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See https://www.biostars.org/p/68352 "Extract Cg Dinucleotides Coordinates From (Human) Genome" -
Thank you very much @lindenb. That was of great help for me!.Comment
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