Hi guys
I would like to ask you a help with the sam format flag. I am using samtools to extract reads from a bam file. Briefly I need to extract all mapped reads in a certain range which is easy to achieve by using the samtools view command. However I need to extract together with the mapped reads also the eventual corresponding unmapped mates.
How can I do that?
thanks for the help!
I would like to ask you a help with the sam format flag. I am using samtools to extract reads from a bam file. Briefly I need to extract all mapped reads in a certain range which is easy to achieve by using the samtools view command. However I need to extract together with the mapped reads also the eventual corresponding unmapped mates.
How can I do that?
thanks for the help!
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