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.embl to NCBI .tbl format

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  • .embl to NCBI .tbl format

    i have an annotated genome in .embl format and would like to extract the feature table from this so i can use it for submission to NCBI via tbl2asn along with a genome fast file.
    Does anyone know a way to parse feature tables from .embl files, i'm really stuck here.
    The bacterium i am working on has no reference genome, so it has unfortunately fallen to me to submit one.

  • #2
    BioPerl, Biopython, EMBOSS etc all understand and can parse EMBL format, so could at least convert it into GenBank format from which you might have more options?

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    • #3
      Once you get to the GenBank format as Peter suggested this should help with remainder of the task: http://seqanswers.com/forums/showthread.php?t=19975

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