Wow ok, that worked thank you! Apparently -lz was missing from the Makefile adding your suggestion while running the "./configure" command fixed it!
Thank you!
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Can you check the Makefile and see if you can find a line that says LIBS? If there is "-lz" in that line, move it to the end of that line.
One other thing to try would be (if -lz is missing):
Code:$ ./configure LIBS="-lz"
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GapFiller compiling problem
Hey!
For the last couple of days I've been trying to install GapFiller on linux. Sadly, i failed several times. After I ./configure; make i end up with the following error:
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/usr/bin/ld: samtools/GapFiller-bam_import.o: undefined reference to symbol 'gzdopen'
//usr/local/lib/libz.so.1: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
make[1]: *** [GapFiller] Error 1
make[1]: Leaving directory `$HOME/ngs/gapfiller-2.1.1/src'
make: *** [all-recursive] Error 1
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Has anyone encountered this error before? I've read quite abit about it, but couldnt find an effective solution. I've compiled a bunch of other softwares and they all worked fine.
Any input would be appreciated!
Best,Last edited by exo; 11-04-2014, 06:01 AM.
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...05-22-2026, 06:42 AM
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