Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • JManuelMonroyKuhn
    Member
    • Oct 2014
    • 25

    Installation error BLAT

    I tried to install BLAT but at the end I got this error

    make[1]: Leaving directory `/home/hpc/uj502/di29kiz/blatSrc/jkOwnLib'
    cd blat && make
    make[1]: Entering directory `/home/hpc/uj502/di29kiz/blatSrc/blat'
    gcc -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64-suse-linux -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blat.o -c blat.c
    <command-line>:0:16: warning: missing whitespace after the macro name
    gcc -O -g -o /home/hpc/uj502/di29kiz/bin/x86_64-suse-linux/blat blat.o ../lib/x86_64-suse-linux/jkOwnLib.a ../lib/x86_64-suse-linux/jkweb.a -pthread -lm
    /usr/bin/ld: cannot open output file /home/hpc/uj502/di29kiz/bin/x86_64-suse-linux/blat: No such file or directory
    collect2: error: ld returned 1 exit status
    make[1]: *** [blat] Error 1
    make[1]: Leaving directory `/home/hpc/uj502/di29kiz/blatSrc/blat'
    make: *** [all] Error 2

    Any help I'll appreciate! Thank you
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    That looks like only a warning. Are there other parts of log that you did not post?

    I assume you are at an academic institution so why not try the pre-compiled version here: http://hgdownload.cse.ucsc.edu/admin/exe/

    Comment

    • JManuelMonroyKuhn
      Member
      • Oct 2014
      • 25

      #3
      Hello!
      I just solve it! I just had to do a directory ~/bin/x86_64-suse-linux. Very easy and basic! Thanks!

      Comment

      Latest Articles

      Collapse

      • GATTACAT
        Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by GATTACAT
        Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
        07-01-2026, 11:43 AM
      • SEQadmin2
        Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by SEQadmin2


        I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

        Here are nine questions we think about, in roughly the order they matter, before...
        06-18-2026, 07:11 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 07-02-2026, 11:08 AM
      0 responses
      12 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-30-2026, 05:37 AM
      0 responses
      15 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-26-2026, 11:10 AM
      0 responses
      20 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-17-2026, 06:09 AM
      0 responses
      54 views
      0 reactions
      Last Post SEQadmin2  
      Working...