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  • multiple colData in DESeq2

    Hi,
    I was wondering whether DESeq2 has this feature, where we can assign a different colData to each row of the countData? To be more specific, what I'm doing so far is that I have a fixed data frame colData, which corresponds to the countData. However, I want to look at this model where one specific column in colData (say, the first column) varies based on the gene (i.e., a row in the countdata matrix) I'm looking at.
    Thanks,
    Golsheed

  • #2
    No, in DESeq2, the X must be the same for all genes.

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