Hello!!
I'm trying to run Oases to see if I properly installed it on a cluster.
I ran it using the python script
python /home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py -m 21 -M 25 -s 2 -o PE_assembly -d '-fastq -shortPaired -separate /home/hpc/uj502/di29kiz/reads.right.fq /home/hpc/uj502/di29kiz/reads.left.fq' -p '-ins_length 259 -min_trans_lgth_100'
I got this error
Traceback (most recent call last):
File "/home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py", line 121, in <module>
main()
File "/home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py", line 115, in main
singleKAssemblies(options)
File "/home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py", line 46, in singleKAssemblies
assert p.returncode == 0, "Oases failed at k = %i\n%s" % (k, output[0])
AssertionError: Oases failed at k = 21
Unusual number of arguments!
What can be the problem?
Thanks
I'm trying to run Oases to see if I properly installed it on a cluster.
I ran it using the python script
python /home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py -m 21 -M 25 -s 2 -o PE_assembly -d '-fastq -shortPaired -separate /home/hpc/uj502/di29kiz/reads.right.fq /home/hpc/uj502/di29kiz/reads.left.fq' -p '-ins_length 259 -min_trans_lgth_100'
I got this error
Traceback (most recent call last):
File "/home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py", line 121, in <module>
main()
File "/home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py", line 115, in main
singleKAssemblies(options)
File "/home/hpc/uj502/di29kiz/oases_0.2.8/scripts/oases_pipeline.py", line 46, in singleKAssemblies
assert p.returncode == 0, "Oases failed at k = %i\n%s" % (k, output[0])
AssertionError: Oases failed at k = 21
Unusual number of arguments!
What can be the problem?
Thanks
Comment