cufflinks assembling problem

[awayihaha]

hi all,

I use gsnap as my mapping tool and got a .bam file. Then, I used cufflinks to get the transcript.gtf. But I always have a stuck at 99%.

>>waiting for 7 threads to complete [***************** ] 99%

I have tried to cancel it and start over again or update cufflinks to the latest version, But the problem still remain.

Any suggestions will be appreciated, Thank you.

[awayihaha]

hi all,

I use gsnap as my mapping tool and got a .bam file. Then, I used cufflinks to get the transcript.gtf. But I always have a stuck at 99%.

>>waiting for 7 threads to complete [***************** ] 99%

I have tried to cancel it and start over again or update cufflinks to the latest version, But the problem still remain.

Any suggestions will be appreciated, Thank you.

If I didn't use parameter (-p), cufflinks could finish the assembly normally. But it spent a lot of time. When I used -p 8, I always meet the stuck. It puzzled me for a long time.