Hello,
i wanted to ask if any one tried detecting SNP by blasting genes to contigs, and by the nature of the hits determine which snp is present and which is not.
The general idea is to detect SNP for ST , and i was exploring this as an alternative to using reads and bowtie / varscan
greetings
i wanted to ask if any one tried detecting SNP by blasting genes to contigs, and by the nature of the hits determine which snp is present and which is not.
The general idea is to detect SNP for ST , and i was exploring this as an alternative to using reads and bowtie / varscan
greetings