I am constructing a db for sequences of a specific vertebrate protein (less than 200 aa, and about 600 bp). There are a lot of genomes already sequenced but with only the raw data available. Assembly all of them just for one protein is a waste of time and computer power (that I don't have). The program PRICE (Ruby et al 2013, GGG, 3:865) does the job (assembly starting with a seed) and works well. The problem with PRICE is that it only works with paired-end sequences. Is there other software that could be used for other platforms, starting with a seed?
Thanks for the help. Jaime
Thanks for the help. Jaime
Comment