Question: How to filter transcripts with overlapping exons?

[upendra_35]

When i was going through the bed file, i found that some of the entries define overlapping exons. One example is :

This is UCSC bed file format:

A01    5943412    5943616    Bra1000073    168    +    5943412    5943616    255,0,0    2    90,124    0,80

where you can see that the first exon goes from 0-90 and the second one from 80-124 (last column)

I am wondering is there a way to filter these kind of transcripts?



Thanks
Upendra